raer - RNA editing tools in R
Toolkit for identification and statistical testing of RNA editing signals from within R. Provides support for identifying sites from bulk-RNA and single cell RNA-seq datasets, and general methods for extraction of allelic read counts from alignment files. Facilitates annotation and exploratory analysis of editing signals using Bioconductor packages and resources.
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multiplecomparisonrnaseqsinglecellsequencingcoverageepitranscriptomicsfeatureextractionannotationalignmentbioconductor-packagerna-seq-analysissingle-cell-analysissingle-cell-rna-seqcurlbzip2xz-utilszlib
6.04 score 11 stars 7 scripts 428 downloadsclustifyrdatahub - External data sets for clustifyr in ExperimentHub
References made from external single-cell mRNA sequencing data sets, stored as average gene expression matrices. For use with clustifyr <https://bioconductor.org/packages/clustifyr> to assign cell type identities.
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singlecelldatasequencingdatamicroarraydataexperimenthubrnaseqdatapackagetypedataexpressiondatarna-seq-analysissingle-cellsingle-cell-rna-seqdatapkg
5.99 score 9 stars 18 scriptsraerdata - A collection of datasets for use with raer package
raerdata is an ExperimentHub package that provides a collection of files useful for demostrating functionality in the raer package. Datasets include 10x genomics scRNA-seq, bulk RNA-seq, and paired whole-genome and RNA-seq data. Additionally databases of human and mouse RNA editing sites are provided.
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singlecelldatasequencingdatarnaseqdataexperimenthubpackagetypedataexpressiondatadatapkg
3.30 score 4 scripts